In this article, we introduce a new approach towards the statistical learning problem argminρ(θ)∈PθWQ2(ρ⋆,ρ(θ))\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\mathrm{argmin}_{\rho (\theta ) \in {\mathcal {P}}_{\theta }} W_{Q}^2 (\rho _{\star },\rho (\theta ))$$\end{document} to approximate a target quantum state ρ⋆\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\rho _{\star }$$\end{document} by a set of parametrized quantum states ρ(θ)\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\rho (\theta )$$\end{document} in a quantum L2\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$L^2$$\end{document}-Wasserstein metric. We solve this estimation problem by considering Wasserstein natural gradient flows for density operators on finite-dimensional C∗\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$C^*$$\end{document} algebras. For continuous parametric models of density operators, we pull back the quantum Wasserstein metric such that the parameter space becomes a Riemannian manifold with quantum Wasserstein information matrix. Using a quantum analogue of the Benamou–Brenier formula, we derive a natural gradient flow on the parameter space. We also discuss certain continuous-variable quantum states by studying the transport of the associated Wigner probability distributions.