Emerging 5G millimeter-wave and sub-6 GHz networks enable high-accuracy indoor localization, but security and privacy vulnerabilities pose serious challenges. In this paper, we identify and address threats including location spoofing and adversarial signal manipulation against 5G-based indoor localization. We formalize a threat model encompassing attackers who inject forged radio signals or perturb channel measurements to mislead the localization system. To defend against these threats, we propose an adversary-resilient localization architecture that combines deep learning fingerprinting with physical do-main knowledge. Our approach integrates multi-anchor Channel Impulse Response (CIR) fingerprints with Time Difference of Arrival (TDoA) features and known anchor positions in a hybrid Convolutional Neural Network (CNN) and multi-head attention network. This design inherently checks geometric consistency and dynamically down-weights anomalous signals, making localization robust to tampering. We formulate the secure localization problem and demonstrate, through extensive experiments on a public 5G indoor dataset, that the proposed system achieves a mean error approximately 0.58 $m$ under mixed Line-of-Sight (LOS) and Non-Line-of-Sight (NLOS) trajectories in benign conditions and gracefully degrades to around $0.81m$ under attack scenarios. We also show via ablation studies that each architecture component (attention mechanism, TDoA, etc.) is critical for both accuracy and resilience, reducing errors by 4–5 times compared to baselines. In addition, our system runs in real-time, localizing the user in just 1 ms on a simple CPU. The code has been released to ensure reproducibility: https://github.com/sec5gloc/Sec5GLoc.