Quantum kernels hold significant promise for achieving computational advantages in quantum machine learning (QML), yet their effectiveness critically depends on the design of expressive and hardware-compatible feature maps, a challenge that is particularly pronounced on Noisy Intermediate-Scale Quantum (NISQ) devices with limited qubits, gate errors, and restricted connectivity. In this work, we propose a hardware-aware framework for automated quantum kernel design that integrates quantum device characteristics with learning-based evaluation. Specifically, candidate quantum circuits explored within the hardware-aware circuit space are represented as directed acyclic graphs (DAGs) encoding hardware-specific information such as gate operations, qubit interactions, and noise properties, while a dual graph neural network (GNN) predictor is employed to estimate key surrogate metrics, including probability of successful trials (PST) and kernel-target alignment (KTA), enabling efficient and accurate assessment of circuit fidelity and kernel performance to facilitate the identification of task-specific quantum kernels. Furthermore, feature selection is incorporated to reduce input dimensionality and ensure compatibility with near-term devices. Extensive experiments on multiple benchmark datasets, including Credit Card (CC), MNIST-5, and FMNIST-4, demonstrate that our method consistently outperforms existing baselines in classification accuracy, effectively balancing hardware constraints and model expressivity under realistic noise conditions. These results highlight the potential of combining hardware-aware design with deep learning techniques to advance practical quantum kernel methods and facilitate their deployment on near-term quantum hardware.
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