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321 matches · Single-cell and spatial transcriptomics

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001Mask-Aware Smoothness-Regularized GANs for Spatio-Temporal Data ImputationOpenAlexPaperQi Chen, Maozai TianJul 23
002Mask-Aware Smoothness-Regularized GANs for Spatio-Temporal Data ImputationOpenAlexPaperQi Chen, Maozai TianJul 23
003Unified multimodal computational pathology with missing-modality robustness via Riemannian learningOpenAlexPaperGuang Yang, Mingcheng Qu et al.Jul 22
004Multicenter self-supervised computational pathology identifies prognostic histomorphological phenotypes in colorectal cancerOpenAlexPaperFloor Heilijgers, Hortense Le et al.Jul 21
005Novel nested conformal prediction analysis to unravel complexity in patient subtypingOpenAlexPaperLinda Maldera, Marco Masseroli et al.Jul 20
006The biomarker compass: a revolution driving precision medicineOpenAlexPaperScott A. Waldman, André TerzicJul 20
007A Survey of Algorithms for Convex Hull Computation in High Dimensional SpacesOpenAlexPaperThe University of Texas at DallasJul 13
008A Survey of Algorithms for Convex Hull Computation in High Dimensional SpacesOpenAlexPaperThe University of Texas at DallasJul 13
009Residual Multi-Modal Learning for Pan-Breast-Cancer Drug Response PredictionOpenAlexPaperBeibei Huang, Lance Tasaka et al.Jul 8
010Characterization of DLBCL cell of origin-phenotypes based on tumor microenvironment featuresOpenAlexPaperStefano Ugliano, Martim Gomes et al.Jul 7
011Data set creation for supervised deep learning–based analysis of microscopic images: Review of important considerations and recommendationsOpenAlexPaperChristof Bertram, Viktoria Weiss et al.Jun 30
012The role of computational pathology in predicting expression of selected immunohistochemical markersOpenAlexPaperMateusz Miller, Martyna Przybylska et al.Jun 25
013Three multimodal large language models fail at clinically actionable breast pathology in three different directionsOpenAlexPaperSun-Young Jun, Seonhui Kim et al.Jun 22
014Coarsening at Random: A Small Monograph on Masked-Data Identifiability Across DomainsOpenAlexPaperAlexander TowellJun 19
015Coarsening at Random: A Small Monograph on Masked-Data Identifiability Across DomainsOpenAlexPaperAlexander TowellJun 19
016TOPO-2026: Universal Continual Learning via Prime-Anchored Embedding Invariants Empirical Validation Across Five Architectures and Formal Proof via Arithmetic Spectral TheoryOpenAlexPaperFrank MoralesJun 19
017TOPO-2026: Universal Continual Learning via Prime-Anchored Embedding Invariants Empirical Validation Across Five Architectures and Formal Proof via Arithmetic Spectral TheoryOpenAlexPaperFrank MoralesJun 19
018From Ethical Debate to Clinical Reality: A Bibliometric and Computational Analysis of Artificial Intelligence, Gene Editing, and Xenotransplantation Research (2015–2025)OpenAlexPaperHarshit AkuthotaJun 17
019From Ethical Debate to Clinical Reality: A Bibliometric and Computational Analysis of Artificial Intelligence, Gene Editing, and Xenotransplantation Research (2015–2025)OpenAlexPaperHarshit AkuthotaJun 17
020Dissecting and directing pathology foundation modelsOpenAlexPaperChanwoo Kim, Jakub Kaczmarzyk et al.Jun 16
021Evaluating the learnability of single-cell large language models on multiple tasksOpenAlexPaperYu Yan, Xutao Wang et al.Jun 5
022MyoNet and AlveoliNet: A hybrid 3D neural-net pipeline for the instance segmentation and scoring of epithelial cells in intact mammary alveoliOpenAlexPaperColin RF Monks, Sarah A Fester et al.May 29
023Coarsening at random for differential privacy: analyst-side identifiability under privacy mechanismsOpenAlexPaperAlexander TowellMay 28
024Coarsening at random for differential privacy: analyst-side identifiability under privacy mechanismsOpenAlexPaperAlexander TowellMay 28
025Practical guidelines for multiple instance learning in computational pathology: how embedding choice impacts overall survival predictionOpenAlexPaperFrancesca Miccolis, Elisa Ficarra et al.May 20
026A unified benchmark of synthetic data generation for clinical transcriptomic cancer cohortsOpenAlexPaperThe-Chuong Trinh, Jean‐Baptiste Woillard et al.May 16
027Digital Pathology and the AI-Based Quantification of the Tumor Microenvironment in Gastrointestinal Cancer: From Tumor Budding and Tumor-Infiltrating Lymphocytes to Tertiary Lymphoid StructuresOpenAlexPaperJustyna Łapińska, Klaudia Kasperczuk et al.May 14
028Mechanisms Matter: Transportability of Cellular Perturbation EffectsOpenAlexPaperShi-ang Qi, Paidamoyo ChapfuwaMay 12
029Cell-as-Substrate: Cells Holding Coordination State Outside Substrate as Standalone Anti-Pattern in the Coordination Knowledge Substrate PatternOpenAlexPaperWENXIN LIMay 6
030Cell-as-Substrate: Cells Holding Coordination State Outside Substrate as Standalone Anti-Pattern in the Coordination Knowledge Substrate PatternOpenAlexPaperWENXIN LIMay 6
031DIANNE: Segmentation-Free Localization of Histology Differential AttributesOpenAlexPaperSergii Domanskyi, Jill C. Rubinstein et al.May 1
032MSCF-Net: unified multi-scale feature disentanglement for co-registered nucleus segmentation and virtual stainingOpenAlexPaperChunxue Shao, Qi Yu et al.May 1
033Digital twins in IBD—bridging data, biology and trial innovationOpenAlexPaperMichael Colwill, Sailish Honap et al.Apr 29
034Digital pathology and artificial intelligence in breast and gynecologic oncology: from molecular prediction to multimodal integrationOpenAlexPaperFrancesca Polit, Hisham F. Bahmad et al.Apr 24
035A unified analysis on cross-architecture generalizability of coresetsOpenAlexPaperD Chen, J LIU et al.Apr 23
036Leveraging Hamiltonian neural flow for robust single-cell multi-omics integration: application to Alzheimer’s diseaseOpenAlexPaperZiheng Huang, Wei Kong et al.Apr 23
037Phenotyping of Histology Imaging Data with HistomicsOpenAlexPaperFnu Neha, Deepshikha Bhati et al.Apr 21
038CCVGAE: A centroid-coupled variational graph attention autoencoder for stable and interpretable single-cell representation learningOpenAlexPaperZeyu Fu, Yiyao Liu et al.Apr 16
039Federated Artificial Intelligence in Drug Discovery and Genomic ResearchOpenAlexPaperVikas Sharma, Kamlesh Kumar Gautam et al.Apr 9
040A Multimodal Cross-Attention Pathotranscriptome Integration for Enhanced Survival Prediction of Oral Squamous Cell CarcinomaOpenAlexPaperKountay Dwivedi, Amirreza Mahbod et al.Apr 8
041Adaptive Integration of Heterogeneous Foundation Models to Find Histologically Predictable Genes in Breast CancerOpenAlexPaperHao N. Nguyen, Chaoyi Li et al.Apr 8
042High-Quality Synthetic Annotated Tissue Data Using Conditional Generative Adversarial NetworksOpenAlexPaperSiddharth Srivastava, Cornelis J. Weijer et al.Apr 8
043Morphfed: Federated Learning for Cross-Institutional Blood Morphology AnalysisOpenAlexPaperGabriel Ansah, Eden Ruffell et al.Apr 8
044iLBA: An R package for confidentially disseminating aggregated frequency tablesOpenAlexPaperJeeHyun Hwang, Dongsun Yoon et al.Apr 6
045Zero-Shot Embedding Space Translation via Relative Anchor Similarity ProfilesOpenAlexPaperSojiro UemotoApr 4
046Biologically inspired digital histology for deep phenotyping of placental composition changes across major lesion typesOpenAlexPaperEmma Clare Walker, Claudia Vanea et al.Apr 1
047Multimodal Fusion for Breast Cancer Prognosis: Integrating Frozen Swin-T Backbones with Mutual-Guided AttentionOpenAlexPaperBikash Sharma, Biswanath DeyMar 26
048Multiple Confabulations Found in Bioinformatics Tasks Carried Out by Several Free Large Language ModelsOpenAlexPaperDiego A. ForeroMar 20
049Translating Histopathology Foundation Model Embeddings into Cellular and Molecular Features for Clinical StudiesOpenAlexPaperSaishi Cui, Zhining Sui et al.Mar 19
050Gene Incremental Learning for Single-Cell TranscriptomicsOpenAlexPaperJiaxin Qi, Yan Cui et al.Mar 14
051A toolkit for generating virtual brightfield images of histological and immunohistochemical stains from multiplexed data with AI-based channel selection and image enhancementOpenAlexPaperTristan Whitmarsh, Mohammad Al Sa’d et al.Mar 9
052Towards Useful and Private Synthetic Omics: Community Benchmarking of Generative Models for Transcriptomics DataOpenAlexPaperHakime Öztürk, Tejumade Afonja et al.Mar 4
053Towards Useful and Private Synthetic Omics: Community Benchmarking of Generative Models for Transcriptomics DataOpenAlexPaperHakime Öztürk, Tejumade Afonja et al.Mar 4
054Branched Schrödinger Bridge Matching.OpenAlexPaperSophia Tang, Yinuo Zhang et al.Mar 2
055Artificial intelligence to revolutionize IBD clinical trialsOpenAlexPaperRocío Sedaño, Virginia Solitano et al.Feb 26
056CellAwareGNN: Single-Cell Enhanced Knowledge Graph Foundation Model for Drug Indication PredictionOpenAlexPaperXinmeng Zhang, Eugene Jeong et al.Feb 23
057Core Concepts of Understanding Generative AI Algorithms and ModelsOpenAlexPaperVaibhavi Chavan, R. AyswaryaFeb 23
058A computer vision method to evaluate tumor-infiltrating lymphocytes and multiparametric modeling of neoadjuvant systemic therapy response in breast cancerOpenAlexPaperMateusz Bielecki, Fang-I Lu et al.Feb 20
059Generative Distribution Embeddings: Lifting autoencoders to the space of distributions for multiscale representation learning.OpenAlexPaperNic Fishman, Gokul Gowri et al.Feb 20
060Selective multimodal deep learning for reliable breast cancer subtype classification from histopathology and genomic dataOpenAlexPaperNabil Hezil, Ahmed Bouridane et al.Feb 11

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