LOCAL-GLOBAL ALIGNMENT FOR FINDING 3D SIMILARITIES IN PROTEIN STRUCTURES

Patent №

US 8,024,127

Granted

2011-09-20

Filed 2004

Owner

REGENTS OF THE UNIVERSITY OF CALIFORNIA, THE

+2 more

AI components

4

ml · nlp · vision · kr

Assignment

Recorded

Dataset

AIPD

2023_r1 edition

Application

10782061

A method of finding 3D similarities in protein structures of a first molecule and a second molecule. The method comprises providing preselected information regarding the first molecule and the second molecule. Comparing the first molecule and the second molecule using Longest Continuous Segments (LCS) analysis. Comparing the first molecule and the second molecule using Global Distance Test (GDT) analysis. Comparing the first molecule and the second molecule using Local Global Alignment Scoring function (LGA_S) analysis. Verifying constructed alignment and repeating the steps to find the regions of 3D similarities in protein structures.

AI classification

Natural language1.00
Vision0.88
Knowledge representation0.75
Machine learning0.63
Evolutionary computation0.07
AI hardware0.05
Planning0.00
Speech0.00

Ownership

REGENTS OF THE UNIVERSITY OF CALIFORNIA, THE

assignment · 150240033

U.S. DEPARTMENT OF ENERGY

assignment · 153090599

LAWRENCE LIVERMORE NATIONAL SECURITY, LLC

assignment · 382060059

Assignors

ZEMLA, ADAM T.

On an employer assignment, the assignors are typically the inventors.

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